Molecular dynamics modelling of the stress–strain response of β-sheet nanocrystals

TAŞSEVEN Ç., AKDERE Ü., GÜNAY S. D., AKSAKAL B.

Computational Materials Science, cilt.246, 2025 (SCI-Expanded) identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 246
  • Basım Tarihi: 2025
  • Doi Numarası: 10.1016/j.commatsci.2024.113367
  • Dergi Adı: Computational Materials Science
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus, Academic Search Premier, PASCAL, Aerospace Database, Applied Science & Technology Source, Chimica, Communication Abstracts, Compendex, Computer & Applied Sciences, INSPEC, Metadex, Civil Engineering Abstracts
  • Anahtar Kelimeler: Hydrogen bonding, Mechanical properties, Molecular dynamics, Stress–strain, β-sheet crystals
  • Yıldız Teknik Üniversitesi Adresli: Evet

Özet

Molecular dynamics simulations were conducted on two model antiparallel β-sheet crystallites [GA]n and [GAS]n to study deformation in chain, sheet stacking, and hydrogen bonding directions under uniaxial loading. In chain direction, both models were mechanically stable, even beyond the 570 K amorphousation temperature of silk fiber; however, [GA]n model displayed higher yield strain, stress, elastic modulus, and resilience than [GAS]n. In transverse directions, they had similar stress–strain behavior and demonstrated significant anisotropic mechanical behavior. Hence, inclusion of an amino acid with a rich side chain group extending between β-sheets reduces the stiffness of crystallite in chain direction. Serine and alanine residues maintained existing H-bonds and established new ones during stretching in chain direction and shrinking in transverse directions which affected the mechanical response near the yield point. Comparison between β-sheet crystallite and PPTA (Kevlar) showed that the mechanical performance of these crystal polymers were very similar in chain direction, but contrarily β-sheet crystallite had higher stiffness in H-bonding and sheet stacking directions than PPTA. This study may provide a guideline in designing of polyaminoacid based biocompatible materials with superior mechanical performance.