Doç. Dr. Alper YILMAZ

Yayın Ağı

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

The role of ceRNAs in breast cancer microenvironmental regulation and therapeutic implications

YILMAZ A., Ari Yuka S.

Journal of Molecular Medicine , 2024 (SCI-Expanded)

Efficient Storage and Analysis of Genomic Data: A k-mer Frequency Mapping and Image Representation Method

Luleci H. B., Yuka S. A., YILMAZ A.

Interdisciplinary Sciences - Computational Life Sciences , 2024 (SCI-Expanded)

Comparative analysis of retrosynthesis applications for predicting of pathways for plant Secondary metabolite production

Yonet N., ARI YUKA S., TÜRKER M., YILMAZ A.

Biotechnology and Biotechnological Equipment , cilt.38, sa.1, 2024 (SCI-Expanded)

Biofabrication of Acer palmatum-Mediated Multifunctional CuO Nanoparticles for Dye Removal, Antibacterial-Antifungal Activity, and Molecular Docking

Sazak C., ATTAR A., YILMAZ A., ALTIKATOĞLU YAPAÖZ M.

ACS Omega , cilt.8, sa.40, ss.36835-36844, 2023 (SCI-Expanded)

PGT for structural chromosomal rearrangements in 300 couples reveals specific risk factors but an interchromosomal effect is unlikely

Ogur C., Kahraman S., Griffin D. K., Cinar Yapan C., Tufekci M. A., Cetinkaya M., et al.

Reproductive BioMedicine Online , cilt.46, sa.4, ss.713-727, 2023 (SCI-Expanded)

Effect of SARS-CoV-2 infection on host competing endogenous RNA and miRNA network.

Ari Yuka S., Yilmaz A.

PeerJ , cilt.9, sa.e12370, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

Network based multifactorial modelling of miRNA-target interactions

Ari Yuka S., Yilmaz A.

PEERJ , cilt.9, 2021 (SCI-Expanded)

Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq)

Ouma W. Z., Mejia-Guerra M. K., YILMAZ A., PAREJA-TOBES P., Li W., Doseff A. I., et al.

SCIENTIFIC REPORTS , cilt.5, 2015 (SCI-Expanded)

Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets

Arango D., Morohashi K., Yilmaz A., Kuramochi K., Parihar A., Brahimaj B., et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , cilt.110, sa.24, 2013 (SCI-Expanded)

Unraveling the KNOTTED1 regulatory network in maize meristems

Bolduc N., Yilmaz A., Mejia-Guerra M. K., Morohashi K., O'Connor D., Grotewold E., et al.

GENES & DEVELOPMENT , cilt.26, sa.15, ss.1685-1690, 2012 (SCI-Expanded)

A Genome-Wide Regulatory Framework Identifies Maize Pericarp Color1 Controlled Genes

Morohashi K., Casas M. I., Falcone Ferreyra L., Mejia-Guerra M. K., Pourcel L., Yilmaz A., et al.

PLANT CELL , cilt.24, sa.7, ss.2745-2764, 2012 (SCI-Expanded)

Thriving under Stress: Selective Translation of HIV-1 Structural Protein mRNA during Vpr-Mediated Impairment of eIF4E Translation Activity

Sharma A., Yilmaz A., Marsh K., Cochrane A., Boris-Lawrie K.

PLOS PATHOGENS , cilt.8, sa.3, 2012 (SCI-Expanded)

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update

Yilmaz A., Mejia-Guerra M. K., Kurz K., Liang X., Welch L., Grotewold E.

NUCLEIC ACIDS RESEARCH , cilt.39, 2011 (SCI-Expanded)

Genome sequencing and analysis of the model grass Brachypodium distachyon

Vogel J. P., Garvin D. F., Mockler T. C., Schmutz J., Rokhsar D., Bevan M. W., et al.

NATURE , cilt.463, sa.7282, ss.763-768, 2010 (SCI-Expanded)

Components and Mechanisms of Regulation of Gene Expression

YILMAZ A., Grotewold E.

COMPUTATIONAL BIOLOGY OF TRANSCRIPTION FACTOR BINDING , cilt.674, ss.23-32, 2010 (SCI-Expanded)

The word landscape of the non-coding segments of the Arabidopsis thaliana genome

Lichtenberg J., Yilmaz A., Welch J. D., Kurz K., Liang X., Drews F., et al.

BMC GENOMICS , cilt.10, 2009 (SCI-Expanded)

GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

Yilmaz A., Nishiyama M. Y., Fuentes B. G., Souza G. M., Janies D., Gray J., et al.

PLANT PHYSIOLOGY , cilt.149, sa.1, ss.171-180, 2009 (SCI-Expanded)

NOD/SCID mouse model of canine T-cell lymphoma with humoral hypercalcaemia of malignancy: cytokine gene expression profiling and in vivo bioluminescent imaging

Nadella M. V. P., Kisseberth W. C., Nadella K. S., Thudi N. K., Thamm D. H., McNiel E. A., et al.

VETERINARY AND COMPARATIVE ONCOLOGY , cilt.6, sa.1, ss.39-54, 2008 (SCI-Expanded)

RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1

Bolinger C., Yilmaz A., Hartman T. R., Kovacic M. B., Fernandez S., Ye J., et al.

NUCLEIC ACIDS RESEARCH , cilt.35, sa.8, ss.2629-2642, 2007 (SCI-Expanded)

Retrovirus translation initiation: Issues and hypotheses derived from study of HIV-1

Yilmaz A., BOLINGER C., BORIS-LAWRIE K.

CURRENT HIV RESEARCH , cilt.4, sa.2, ss.131-139, 2006 (SCI-Expanded)

Coordinate enhancement of transgene transcription and translation in a lentiviral vector

Yilmaz A., FERNANDEZ S., LAIRMORE M. D., BORIS-LAWRIE K.

RETROVIROLOGY , cilt.3, 2006 (SCI-Expanded)

Diğer Dergilerde Yayınlanan Makaleler

Balıkesir/Antandros Antik Kenti Kazısı Toprak Örneklerinin Metagenomik Analizi

Bal D., Balci B., Yilmaz A., Polat G., Arican E.

Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi , cilt.26, sa.1, ss.1-12, 2022 (Hakemli Dergi) Sürdürülebilir Kalkınma

Convolutional Neural Network Approach to Predict Tumor Samples Using Gene Expression Data

DARENDELİ KİRAZ B. N., YILMAZ A.

Zeki sistemler teori ve uygulamaları dergisi (Online) , cilt.4, sa.2, ss.136-141, 2021 (Hakemli Dergi)

Assessment of Mutation Susceptibility in DNA Sequences with Word Vectors

YILMAZ A.

Zeki Sistemler Teori ve Uygulamaları Dergisi , cilt.3, sa.1, ss.1-6, 2020 (Hakemli Dergi)

POPcorn: An Online resource providing access to distributed and diverse maize project data

Cannon E. K., Birkett S. M., Braun B. L., Kodavali S., Jennewein D. M., Yilmaz A., et al.

International Journal of Plant Genomics , cilt.2011, 2011 (Scopus)

Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

A New Network-Based Tool to Analyse Competing Endogenous RNAs

Yuka S., Yılmaz A.

16th International Symposium on Bioinformatics Research and Applications, ISBRA 2020, Moscow, Rusya, 1 - 04 Aralık 2020, ss.274-281

Constructing Accurate Compound Networks for Reliable Network Analysis

Alpaydın D., Öztürk R., Yılmaz A.

12th International Symposium on Health Informatics and Bioinformatics (HIBIT) 2019, İzmir, Türkiye, 17 - 18 Ekim 2019, ss.230 Sürdürülebilir Kalkınma

Reduction of Depression Symptoms via the Metabolites of Gut Microbiota

Mawaldı I., Yılmaz A.

12th International Symposium on Health Informatics and Bioinformatics (HIBIT) 2019, İzmir, Türkiye, 17 - 18 Ekim 2019, ss.218 Sürdürülebilir Kalkınma

Automation of Genetic Screening and Reporting with Snakemake

Kalyon O., Müslümanoğlu M. H., Yılmaz A.

12th International Symposium on Health Informatics and Bioinformatics (HIBIT) 2019, İzmir, Türkiye, 17 - 18 Ekim 2019, ss.219

Prediction of Mutation Susceptibility Based on Solely DNA Sequences with Word2Vec

Darendeli B. N., Kalyon O., Yılmaz A.

12th International Symposium on Health Informatics and Bioinformatics (HIBIT) 2019, İzmir, Türkiye, 17 - 18 Ekim 2019, ss.222-223

Breast cancer gene expression profile analysis in terms of genes specific to non- breast tissues

Konuk H. B., Yılmaz A.

1st International Conference of Genomics and Bioinformatics (ICGB), Aydın, Türkiye, 1 - 04 Kasım 2018, ss.30 Sürdürülebilir Kalkınma

Batch Analyis of RNA-Seq Data with Docker in AWS Cloud

Yılmaz A.

ICAMLS 2018 International Conference on Applied Mathematics, Modeling and Life Science Problems, İstanbul, Türkiye, 3 - 05 Ekim 2018, ss.87

What is the relationship between cancer DEGs and tissue specific genes

Konuk H. B., Cesur M. R., Yılmaz A.

Lisansüstü Araştırmalar Sempozyumu ve Tanıtım Günleri, Kocaeli, Türkiye, 17 - 18 Mayıs 2017 Sürdürülebilir Kalkınma

Kanserde İfadesi Değişen Genlerin Metabolit Ağı Açısından Değerlendirilmesi

Öztürk R., Yılmaz A.

1.Temel Onkoloji Sempozyumu, İzmir, Türkiye, 9 - 11 Mayıs 2018, ss.30 Sürdürülebilir Kalkınma

Kanser Teşhisinde Derin Öğrenme ile Sınıflandırma

Darendeli B. N., Al-Qabbani H., Yılmaz A.

1.Temel Onkoloji Sempozyumu, İzmir, Türkiye, 9 - 11 Mayıs 2018, ss.48 Sürdürülebilir Kalkınma

Pinpointing the importance of compounds in human metabolic network

Öztürk E. R., Yılmaz A.

7th International Molecular Biology and Biotechnology Congress, Konya, Türkiye, 25 - 27 Nisan 2018, ss.160

Multifactorial Modelling of MicroRNA Associated Repression and Its Subsequent Effects on Gene Expression in MicroRNA:Target Network

Arı S., Yılmaz A.

7th International Molecular Biology and Biotechnology Congress, Konya, Türkiye, 25 - 27 Nisan 2018, ss.401 Sürdürülebilir Kalkınma

RIGOROUS IDENTIFICATION OF TISSUE SPECIFIC GENES IN SILICO: REVEALING THE INTERPLAY BETWEEN CANCER SPECIFIC EXPRESSION AND TISSUE SPECIFIC EXPRESSION

KONUK H. B., YILMAZ A.

International Congress on Advances in Bioscience and Biotechnology, Saraybosna, Bosna-Hersek, 25 - 29 Ekim 2017 Sürdürülebilir Kalkınma

GENERATING LOSSLESS COMPRESSION OF GENOME SCALE K-MER FREQUENCY TABLE AS RASTER IMAGE

KONUK H. B., YILMAZ A.

International Congress on Advances in Bioscience and Biotechnology, Saraybosna, Bosna-Hersek, 25 - 29 Ekim 2017

IDENTIFICATION of TISSUE SPECIFIC GENES and ASSESMENT of THEIR INTERSECTION WITH DIFFERENTIALY EXPRESSED GENES in CANCER DATA to UNDERSTAND TUMOR HETEROGENEITY IN SILICO

Konuk H. B., Cesur M. R., Yılmaz A.

10 th International Symposium on Health Informatics and Bioinformatics, Güzelyurt, Kıbrıs (Kktc), 28 Haziran 2017 Sürdürülebilir Kalkınma

Construction and Comparison of EST Library for Expressed Genes in Normal and Tumoral Mammary Gland Tissue of the Terrier Dog

Ömeroğlu Ulu Z., ÜN C., ÖZTABAK K. Ö., YILMAZ A., ÖZDEMİR ÖZGENTÜRK N.

International Symposium on Molecular Chemistry, 18 - 19 Aralık 2014

Metrikler

Yayın

Atıf (WoS)

2042

H-İndeks (WoS)

Atıf (Scopus)

2141

H-İndeks (Scopus)

Atıf (Scholar)

H-İndeks (Scholar)

Proje

Tez Danışmanlığı

Açık Erişim

BM Sürdürülebilir Kalkınma Amaçları

Yayınlar & Eserler